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2023
Classification of red cell dynamics with convolutional and recurrent neural networks: a sickle cell disease case study
Maxime Darrin, Ashwin Samudre, Maxime Sahun, Scott Atwell, Catherine Badens, Anne Charrier, Emmanuèle Helfer, Annie Viallat, Vincent Cohen-Addad, Sophie Giffard-Roisin
Scientific Reports 13:745 (2023)10.1038/s41598-023-27718-w
2022
Dynamics of Individual Red Blood Cells Under Shear Flow: A Way to Discriminate Deformability Alterations
Scott Atwell, Catherine Badens, Anne Charrier, Emmanuèle Helfer, Annie Viallat
Frontiers in Physiology 12 (2022)10.3389/fphys.2021.775584
First-Principle Coarse-Graining Framework for Scale-Free Bell-Like Association and Dissociation Rates in Thermal and Active Systems
Josip Augustin Janeš, Cornelia Monzel, Daniel Schmidt, Rudolf Merkel, Udo Seifert, Kheya Sengupta, Ana-Sunčana Smith
Physical Review X 12:031030 (2022)10.1103/PhysRevX.12.031030
Physics of Organelle Membrane Bridging via Cytosolic Tethers is Distinct From Cell Adhesion
Mohammad Arif Kamal, Josip Augustin Janeš, Long Li, Franck Thibaudau, Ana-Sunčana Smith, Kheya Sengupta
Frontiers in Physics 9:1-12 (2022)10.3389/fphy.2021.750539
Longitudinal to Transverse Metachronal Wave Transitions in an In Vitro Model of Ciliated Bronchial Epithelium
Olivier Mesdjian, Chenglei Wang, Simon Gsell, Umberto D’ortona, Julien Favier, Annie Viallat, Etienne Loiseau
Physical Review Letters 129:038101 (2022)10.1103/PhysRevLett.129.038101
May the force be with your (immune) cells: an introduction to traction force microscopy in Immunology
Farah Mustapha, Kheya Sengupta, Pierre-Henri Puech
Frontiers in Physics 13:898558 (2022)10.3389/fimmu.2022.898558
Protocol for measuring weak cellular traction forces using well-controlled ultra-soft polyacrylamide gels
Farah Mustapha, Kheya Sengupta, Pierre-Henri Puech
STAR Protocols 3:101133 (2022)10.3389/fimmu.2022.898558
Affinity driven ion exchange EG-OFET sensor for high selectivity and low limit of detection of Cesium in seawater
Tin Phan Nguy, Volkan Kilinc, Ryoma Hayakawa, Catherine Henry-De-Villeneuve, Jean-Manuel Raimundo, Yutaka Wakayama, Anne Charrier
Sensors and Actuators B: Chemical 351:130956 (2022)10.1016/j.snb.2021.130956
Lrrcc1 and Ccdc61 are conserved effectors of multiciliated cell function
Aude Nommick, Camille Boutin, Olivier Rosnet, Claire Schirmer, Elsa Bazellières, Virginie Thomé, Etienne Loiseau, Annie Viallat, Laurent Kodjabachian
Journal of Cell Science (2022)10.1242/jcs.258960
Stoichiometry Controls the Dynamics of Liquid Condensates of Associative Proteins
Pierre Ronceray, Yaojun Zhang, Xichong Liu, Ned Wingreen
Physical Review Letters 128:038102 (2022)10.1103/PhysRevLett.128.038102
A Rare Mutation in LMNB2 Associated with Lipodystrophy Drives Premature Cell Senescence
Alice-Anaïs Varlet, Camille Desgrouas, Cécile Jebane, Nathalie Bonello-Palot, Patrice Bourgeois, Nicolas Levy, Emmanuèle Helfer, Noémie Dubois, René Valero, Catherine Badens, Sophie Beliard
Cells 11:50 (2022)10.3390/cells11010050
2021
OC-0133 Dosimetric characterizations of a novel inorganic scintillating detector - HDR brachytherapy
S. B.C. Debnath, D. Tonneau, C. Fauquet, A. Tallet, A. Goncalves, M. Ferre, J. Darreon
Radiotherapy & Oncology 158:S99 (2021)10.1016/S0167-8140(21)06324-6
In situ plant materials hyperspectral imaging by multimodal scattering near-field optical microscopy
Anne Charrier, Aubin C Normand, Ali Passian, Philip Schaefer, Aude L. L. Lereu
Communications Materials 2:59 (2021)10.1038/s43246-021-00166-7
Spray Pyrolysis Synthesis of Pure and Mg-Doped Manganese Oxide Thin Films
Mohamed Amine Dahamni, Mostefa Ghamnia, Salah Eddine Naceri, Carole Fauquet, Didier Tonneau, Jean-Jacques Pireaux, Abed Bouadi
Coatings 11:598 (2021)10.3390/coatings11050598
Signal amplification of fiber integrated X-ray detector and energy independence
S.B.C. Debnath, J. Darreon, A. Tallet, A. Goncalves, D. Tonneau, C. Fauquet
IEEE Sensors Journal 1-1 (2021)10.1109/JSEN.2021.3091660
Dosimetric characterization of a small-scale (Zn,Cd)S:Ag inorganic scintillating detector to be used in radiotherapy
Sree Bash Chandra Debnath, Didier Tonneau, Carole Fauquet, Agnes Tallet, Anthony Goncalves, Julien Darreon
Physica Medica 84:15-23 (2021)10.1016/j.ejmp.2021.03.022
High resolution small‐scale inorganic scintillator detector: HDR brachytherapy application
Sree Bash Chandra Debnath, Marjorie Ferre, Didier Tonneau, Carole Fauquet, Agnes Tallet, Anthony Goncalves, Julien Darreon
Medical Physics (2021)10.1002/mp.14727
Signal Amplification of Fiber Integrated X-Ray Detector and Energy Independence
Sree Bash Chandra Debnath, Julien Darreon, Agnes Tallet, Anthony Goncalves, Didier Tonneau, Carole Fauquet
IEEE Sensors Journal 21:18793-18799 (2021)10.1109/JSEN.2021.3091660
Biomechanics as driver of aggregation of tethers in adherent membranes
Long Li, Mohammad Arif Kamal, Bernd Henning Stumpf, Franck Thibaudau, Kheya Sengupta, Ana-Sunčana Smith
Soft Matter 17:10101-10107 (2021)10.1039/d1sm00921d
Ligand Nanocluster Array Enables Artificial-Intelligence-Based Detection of Hidden Features in T-Cell Architecture
Aya Nassereddine, Ahmed Abdelrahman, Emmanuelle Benard, F. Bedu, Igor Ozerov, Laurent Limozin, Kheya Sengupta
Nano Letters 21:5606-5613 (2021)10.1021/acs.nanolett.1c01073
Influence of force volume indentation parameters and processing method in wood cell walls nanomechanical studies
Aubin C Normand, Anne Charrier, Olivier Arnould, Aude L. Lereu
Scientific Reports 11:5739 (2021)10.1038/s41598-021-84994-0
Thermoplasmonics of metal layers and nanoholes
Benoit Rogez, Zakaria Marmri, Franck Thibaudau, Guillaume Baffou
APL Photonics 6:101101 (2021)10.1063/5.0057185
Self-organization and shape change by active polarization in nematic droplets
Fabian Jan Schwarzendahl, Pierre Ronceray, Kimberly Weirich, Kinjal Dasbiswas
Physical Review Research 3:043061 (2021)10.1103/PhysRevResearch.3.043061
Integrin-Functionalised Giant Unilamellar Vesicles via Gel-Assisted Formation: Good Practices and Pitfalls
Kheya Sengupta, Mariem Souissi, Julien Pernier, Olivier Rossier, Gregory Giannone, Christophe Le Clainche, Emmanuèle Helfer
International Journal of Molecular Sciences 22:6335 (2021)10.3390/ijms22126335
Nucleation landscape of biomolecular condensates
Shunsuke Shimobayashi, Pierre Ronceray, David Sanders, Mikko Haataja, Clifford Brangwynne
Nature 599:503-506 (2021)10.1038/s41586-021-03905-5
An Interactive micromanipulation station combined to a confocal XRF instrument : proof of concept and volume resolution
D. Tonneau, D. Renahy, S. Douillet, H. Maradj, C. Fauquet, F. Marchi
IEEEXplore Digital Library (2021)10.1109/MARSS49294.2020.9307924
Signal amplification of fiber integrated X-ray detectors by metallization
D. Tonneau
IEEE Sensors Journal 21:18793 (2021)10.1109/JSEN.2021.3091660
Physical bioenergetics: Energy fluxes, budgets, and constraints in cells
Xingbo Yang, Matthias Heinemann, Jonathon Howard, Greg Huber, Srividya Iyer-Biswas, Guillaume Le Treut, Michael Lynch, Kristi L Montooth, Daniel J Needleman, Simone Pigolotti, Jonathan Rodenfels, Pierre Ronceray, Sadasivan Shankar, Iman Tavassoly, Shashi Thutupalli, Denis V Titov, Jin Wang, Peter J Foster
Proceedings of the National Academy of Sciences of the United States of America 118:e2026786118 (2021)10.1073/pnas.2026786118
2017-2022
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X-R2P2 (DOC2AMU PhD grant, Cofunded by Europe, PACA District Council, In Excellence A*MIDEX)
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Prématuration CNRS (2017-2019)
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Région PACA Projet exploratoire ‘BioMimWASH’ (2017-2018)
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ANR TMOL “SENSEI” 2017-2020
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ECO (Academy of Excellence, A*MIDEX) 2018-2021
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AMIDEX ”NORMAL PCW” 2018-2021
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AMIDEX ”Macbio” 2018-2021
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ANR: “Ultra-high throughput sequencing by synchronized synthesis” 2018-2021
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A*Midex Interdisciplinarité ‘MecaLam’ (2018-2021)
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ANR ‘RECAMECA’ (2019-2022)
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NANOPTIX (ANR, 01/01/2019 to 06/30/2022)
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ANR MicroCJ (2019-2021)
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Prématuration AMIDEX (2019)
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A*Midex International 'dvanced Photon Source pour la détection des Ondes Stationnaires de Surface sous radiation X' (2019-2021)
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SPLEENMARK ANR Markers of Spleen Function for Patient Management (2020-24)
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FitRed AMIDEX transfert; Aide à la création de startup : Marqueur de l'aptitude des globules rouges à la microcirculation Bronchoclogdrain (2022-2024)
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Immunobiomechanics IRP INP-CNRS 2022-27 Mechanobiology: collaboration France (CINaM/LAI) & Mexico (UNAM)
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PI startup package CENTURI 2022-26 Measuring and modeling soft living matter
2023-
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ANR Natural and assisted airways drainage in COPD (2023-27)
DNANobodies
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ANR 2023-27 DNA-nanobody agents to interrogate and manipulate immune cell interfaces
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RedEnuc ANR 2023-25 Mechanisms of terminal erythroide nucleation
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Nanofilter Contrat industriel Idylle:Tech transfer 2023-24 Système microfluidique qui mime la filtration mécanique des globules rouges par la rate
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Chaire d'excellence AMIDEX 2023-26 Mechano-technologies for Organoids
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Photo luminescense : excitation with cw He-Cd laser (10 mW, Gaussian TEM00 mode). Spectro resolution of 21 nm/mm of slit aperture
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Micro-XRF analysis: Rh target X-ray source, lateral resolution 20 µm, total X-ray photon flux within the spot area of 2.109 photons/s, EDX SDD detector from Brücker (X-flash)
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AFM
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Electrical measurement platform
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Confocal microscope
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TIRF and RICM microscopy
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Langmuir Film Balance
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Microfluidics combined with high-speed videomicroscopy
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Optical microscopes equipped with temperature and CO2 control
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Optical microscope (bright field, phase contrast, epifluorescence) combined with Atomic Force Microscopy (AFM) and optical tweezers (in construction)
International
- Zhangli Peng (Notre Dame University, Indiana, USA)
- Ali Passian & Rubye Farahi (Oak Ridge National Laboratory, USA)
- Yutaka Wakayama (NIMS, Japan)
- Ana Smith (Uni-Erlangen, Germany)
- Mostefa Ghamnia (LSMC laboratory, University Oran 1, Ben Bella, Algeria)
- Saw HLA and Volker ROSE (Argonne National Laboratory, Center for Nanoscale Materials and Advanced Photon Source , Argonne, IL, USA)
National
- Catherine Henry de Villeneuve (LPMC, Palaiseau)
- Laurent Limozin and Pierre-Henri Puech (LAI, Marseille)
- Gregory Gianonne (IINS, Bordeaux)
- Christophe LeClainche (I2BC, Paris)
- Anthony Goncalves (CRCM, Marseille)
- Agnès Tallet and Julien Darreon (Paoli-Calmettes Institute, Marseille)
- Thierry Grosjean (FEMTO-ST, Besançon, France)
- Guillaume Baffou (Institut Fresnel, Marseille)
- Aude Lereu (Institut Fresnel, Marseille)
- Catherine Badens (APHM, Marseille) Mécanique des biofluides actifs
- Julien Favier (M2P2, Marseille) Mécanique des biofluides actifs
- Pascal Chanez and Delphine Gras (CV2M, Marseille) Mécanique des biofluides actifs
- Vincent GRESSIER, François VIANNA-LEGROS, Christelle ADAM-GUILLERMIN (LMDN lab from IRSN)
Inter departmental (intra-CINaM)
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1‘Method and device for determining red blood cells deformability '.
Inventeurs: A. Viallat, S. Atwell, E. Helfer, A. Charrier, C. Badens. Application N°EP18305914.6, 10 juillet 2018.
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'Amphiphilic molecules layers'.
Inventeurs: A. Charrier, J.M Raimundo, A. Kenaan, S. Lavandier. N° of publication: PCT/EP2016/074569
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'Transistor à effet de champ pouvant notamment être utilisé comme détecteur et procédé de fabrication de ce détecteur'.
Inventeurs: A. Charrier, Tuyen Nguyen Duc, Hervé Dallaporta. N° of publication: WO/2013/083490; EP 2 788 747 B1
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'Device to detect the fixation of a target object on a probe object immobilized on a solid substrate and detection process'.
Inventeurs: A. Charrier, F. Thibaudau. (FR2873818, WO/2006/021716). N° of deposition/publication: 0451747. Publication date: 02.03.2006.
Offres de stages disponibles au niveau Master : contacter le chercheur concerné par e-mail.